Main
Irena Papst, PhD
I’m a scientist specializing in infectious disease modelling with highly-transferable skills in software development, data science, teaching, and scientific communication.
(she/elle)
Research Positions
Scientist
Modelling Hub, Science and Policy Integration Branch
Public Health Agency of Canada
Current - May 2022
- Model and forecast infectious disease spread within the PHAC Modelling Hub
- Develop internal modelling infrastructure and scientific software
Adjunct assistant professor
Department of Mathematics & Statistics
McMaster University
Current - Jul 2022
- Collaborate on research projects related to mathematical biology and public health with members of the department
- Help supervise students undertaking research projects
Postdoctoral fellow
Department of Mathematics & Statistics
McMaster University
May 2022 - Sep 2021
- Modelling and analysing infectious disease dynamics with Drs. David J.D. Earn,
Benjamin M. Bolker, and Jonathan Dushoff - Projects include forecasting SARS-CoV-2 infection reports for Ontario, Canada and developing software for simulating infectious disease spread
Education
PhD, Applied Mathematics
Center for Applied Mathematics
Cornell University
Aug 2021 - Sep 2015
- Thesis: Mathematical modeling of infectious disease dynamics: from recurrence to emergence, advised by Dr. Steven Strogatz
- Minors: Computational Science and Engineering, Mathematics
- Courses: Advanced Topic Modeling, Applied Dynamical Systems, Applied Stochastic Processes, Asymptotics and Perturbation Methods, Matrix Computations, Numerical Analysis and Differential Equations, Stochastic Processes, Theory of Statistics
- GPA: 4.12 out of 4.3
Publications
Age-dependence of hospitalization and fatality for different SARS-CoV-2 variants of concern in Ontario, Canada
Stelmach S, Bolker BM, Papst I, Dushoff J, Earn DJD
N/A
N/A
In preparation
Estimating the impact of COVID-19 vaccination in Canada: a counterfactual study
Mitchell EJ, Papst I, Bolker BM, Walker SW, Earn DJD
N/A
N/A
In preparation
Mathematical modelling for pandemic preparedness in Canada: Learning from COVID-19
Ogden NH, Acheson ES, Brown K, Champredon D, Colijn C, Diener A, Dushoff J, Earn DJD, Gabriele-Rivet V, Gangbe M, Guillouzic S, Hennessy D, Hongoh V, Hurford A, Kanary L, Li M, Ng V, Otto SP, Papst I, Rees EE, Tuite A, MacLeod MR, Murall CL, Waddell L, Wasfi R, Wolfson M
N/A
Oct 2024
Canada Communicable Disease Report
10.14745/ccdr.v50i10a03
I strive to produce clear and engaging publications accompanied by organized public code repositories so that all of my published work is reproducible.
Software
I develop open-source scientific software that is useful, user-friendly and well-documented.
ern
Author
N/A
N/A
- An R package to estimate the Effective Reproduction Number using clinical and wastewater surveillance data, available on GitHub
EPACmodel
Author, maintainer
N/A
N/A
- An R package to use documented and versionned iterations of the Early Pandemic Age-structured Compartmental model, available on GitHub
macpan2
Contributor
N/A
N/A
- An R package to build fast and flexible compartmental models, available on GitHub
I am committed to open science and try to make all materials that I develop freely-available, including my talk slides.
Teaching
My extensive experience teaching spans topics across mathematics, statistics, and computer science, in large and small classroom settings, in-person and online.
Short Course on Forecasting for Decision-Making
Canadian Ecological Forecasting Initiative
Fields Institute
Jul 2023 - Jul 2023
- One of four instructors for this short course with roughly 50 participants
- Developed openly-available teaching materials, including a COVID-19 forecasting case study, a git/GitHub primer, and an introduction to modelling lecture
Introduction to Modelling
Department of Mathematics & Statistics
McMaster University
May 2022 - Jan 2022
- Sole course instructor for a third year course of 150 undergraduate students, leading a team of three teaching assistants
- Wrote and delivered lectures, designed assignments, and planned a group modelling project
- Coordinated grading for all assessments, designed rubrics, and assessed submissions for group project components
- Frequently corresponded with students over email, online discussion boards, and one-on-one in office hours
Made with pagedown.
Last updated on 30 May 25.